AT1G28710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G28700.1); Has 346 Blast hits to 340 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 321; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:10086850..10088025 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38875.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 340 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSFNSSGNL AVAVALLFAG ALYFYFSSIT VSDPMSDLLH NVETRWTEYP VDELEAVLDK AAMGNNKTVI IAMVNKAYVE EVEGGRTMLD LFLESFWEGE 101: GTRPLLDHLM LVAADQTSYD RCLFRRLHCY KMDTDGVDLE GEKVYMSKDF IEMMWRRTHL LLDVLSRGYN LTFTDTDVMW LRSPFPRLSY NESLDMQISV 201: DSIGLVGGHL INTGFYHVRS NNKTISLFQK WYDMRLKSTG MKEQDVLKSL LDSGFFNQLG LNVGFLNTTE FSGFCQDSHD MGVVTTVHAN CCRHILAKIS 301: DLTLVLRDWK RYKASHVNSN WSPHVECGRS WSDTHYIPKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)