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AT5G66320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GATA transcription factor 5
Curator
Summary (TAIR10)
Encodes GATA transcription factor gene GNC, involved in regulating carbon and nitrogen metabolism. Expression occurs in aerial tissue at an early stage of development and is inducible by nitrate.
Computational
Description (TAIR10)
GATA transcription factor 5 (GATA5); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 6 (TAIR:AT3G51080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB022211EMBL:AY136450EMBL:BT010367EMBL:CP002688EnsemblPlants:AT5G66320
EnsemblPlants:AT5G66320.1EnsemblPlants:AT5G66320.2entrez:836764Gene3D:3.30.50.10GeneID:836764Genevisible:Q9FH57GO:GO:0000977
GO:GO:0001085GO:GO:0001228GO:GO:0003682GO:GO:0003700GO:GO:0005634GO:GO:0005667GO:GO:0006366
GO:GO:0008270GO:GO:0030154GO:GO:0045944Gramene:AT5G66320.1Gramene:AT5G66320.2hmmpanther:PTHR10071hmmpanther:PTHR10071:SF163
HOGENOM:HOG000238267InParanoid:Q9FH57InterPro:IPR000679InterPro:IPR013088InterPro:IPR016679KEGG:ath:AT5G66320OMA:CFKSPVP
PaxDb:Q9FH57Pfam:PF00320Pfam:Q9FH57Pfscan:PS50114PhylomeDB:Q9FH57PIRSF:PIRSF016992PRIDE:Q9FH57
PRO:PR:Q9FH57PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:Q9FH57Proteomes:UP000006548RefSeq:NP_201433.1RefSeq:NP_975002.1
scanprosite:PS00344SMART:SM00401SMR:Q9FH57STRING:3702.AT5G66320.1SUPFAM:SSF57716TAIR:AT5G66320tair10-symbols:GATA5
UniGene:At.28170UniProt:Q9FH57
Coordinates (TAIR10) chr5:-:26496208..26497309
Molecular Weight (calculated) 37092.90 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.71
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQAALKSSV RKEMALKTTS PVYEEFLAVT TAQNGFSVDD FSVDDLLDLS NDDVFADEET DLKAQHEMVR VSSEEPNDDG DALRRSSDFS GCDDFGSLPT
101: SELSLPADDL ANLEWLSHFV EDSFTEYSGP NLTGTPTEKP AWLTGDRKHP VTAVTEETCF KSPVPAKARS KRNRNGLKVW SLGSSSSSGP SSSGSTSSSS
201: SGPSSPWFSG AELLEPVVTS ERPPFPKKHK KRSAESVFSG ELQQLQPQRK CSHCGVQKTP QWRAGPMGAK TLCNACGVRY KSGRLLPEYR PACSPTFSSE
301: LHSNHHRKVI EMRRKKEPTS DNETGLNQLV QSPQAVPSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)