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AT5G63670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SPT4 homolog 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5204eggNOG:KOG3490EMBL:AB005234EMBL:AY035161
EMBL:AY063032EMBL:AY084523EMBL:CP002688EnsemblPlants:AT5G63670
EnsemblPlants:AT5G63670.1entrez:836487ExpressionAtlas:Q94C60GeneID:836487
Genevisible:Q94C60GO:GO:0005634GO:GO:0006351GO:GO:0008270
GO:GO:0032786hmmpanther:PTHR12882hmmpanther:PTHR12882:SF1HOGENOM:HOG000172685
InParanoid:Q94C60InterPro:IPR009287InterPro:IPR016046InterPro:IPR022800
InterPro:IPR029040OMA:VRGMYAVPANTHER:PTHR12882PaxDb:Q94C60
Pfam:PF06093Pfam:Q94C60PhylomeDB:Q94C60PIRSF:PIRSF025023
PRIDE:Q94C60PRO:PR:Q94C60ProteinModelPortal:Q94C60Proteomes:UP000006548
Reactome:R-ATH-112382Reactome:R-ATH-113418Reactome:R-ATH-674695RefSeq:NP_568976.1
SMART:SM01389SMR:Q94C60STRING:3702.AT5G63670.1SUPFAM:SSF63393
TAIR:AT5G63670tair10-symbols:SPT42UniGene:At.19652UniProt:Q94C60
Coordinates (TAIR10) chr5:+:25488012..25489247
Molecular Weight (calculated) 13366.10 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.38
Length 116 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSAPAQIPT SFGHELRACL RCRLVKTYDQ FRDAGCENCP FFKMEEDHER IVEVTTPNFN GIISVMDPSR SWAARWLRIG KFAPGCYTLA VSEPLPEEMQ
101: HLCQEERVQY VLPKRM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)