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AT5G56940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At5g56940-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At5g56940-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S16 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S16 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: mitochondrion, ribosome, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: small subunit ribosomal protein 16 (TAIR:AT4G34620.1); Has 8528 Blast hits to 8528 proteins in 2923 species: Archae - 0; Bacteria - 5438; Metazoa - 128; Fungi - 129; Plants - 517; Viruses - 0; Other Eukaryotes - 2316 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0228eggNOG:KOG3419EMBL:AB024035EMBL:AY034927
EMBL:AY059147EMBL:CP002688EnsemblPlants:AT5G56940EnsemblPlants:AT5G56940.1
entrez:835796Gene3D:3.30.1320.10GeneID:835796GO:GO:0003735
GO:GO:0005739GO:GO:0005840GO:GO:0006412GO:GO:0009536
Gramene:AT5G56940.1HAMAP:MF_00385hmmpanther:PTHR12919hmmpanther:PTHR12919:SF20
InterPro:IPR000307InterPro:IPR023803KEGG:ath:AT5G56940KO:K02959
OMA:IRYWLGKPANTHER:PTHR12919Pfam:PF00886PhylomeDB:Q9LTS6
Proteomes:UP000006548RefSeq:NP_200504.1SMR:Q9LTS6STRING:3702.AT5G56940.1
SUPFAM:SSF54565TAIR:AT5G56940TIGRfam:TIGR00002TIGRFAMs:TIGR00002
UniGene:At.7092UniProt:Q9LTS6
Coordinates (TAIR10) chr5:+:23030879..23032200
Molecular Weight (calculated) 15102.20 Da
IEP (calculated) 10.76
GRAVY (calculated) -0.72
Length 135 amino acids
Sequence (TAIR10)
(BLAST)
001: MVVRIRLSRF GCKNRPFFRV MAADSRSPRD GKHLEVLGYF NPLPGQDGGK RMGLKFDRIK YWLSVGAQPS DPVQRLLFRS GLLPPPPMVA MGRKGGARDT
101: RPVDPMTGRY VDAENKTVNA NDNQPKEEDT EAKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)