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AT5G52280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Myosin heavy chain-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Myosin heavy chain-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G63300.1); Has 217843 Blast hits to 105430 proteins in 3541 species: Archae - 2871; Bacteria - 41932; Metazoa - 88690; Fungi - 17315; Plants - 10871; Viruses - 1027; Other Eukaryotes - 55137 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J9ABeggNOG:ENOG4111EBREMBL:AB019226EMBL:AB025603
EMBL:AK176344EMBL:BT014679EMBL:CP002688EnsemblPlants:AT5G52280
EnsemblPlants:AT5G52280.1entrez:835304GeneID:835304GO:GO:0009507
Gramene:AT5G52280.1hmmpanther:PTHR13140hmmpanther:PTHR13140:SF422HOGENOM:HOG000084896
InterPro:IPR019448KEGG:ath:AT5G52280ncoils:CoilOMA:DELAYCK
Pfam:PF10358PhylomeDB:Q9FHD1Proteomes:UP000006548RefSeq:NP_200041.1
STRING:3702.AT5G52280.1TAIR:AT5G52280UniGene:At.43034UniProt:Q9FHD1
Coordinates (TAIR10) chr5:+:21226959..21230109
Molecular Weight (calculated) 98507.50 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.99
Length 853 amino acids
Sequence (TAIR10)
(BLAST)
001: MFKSWRNDKN KIKAVFKLQF QATQVPKLKK TALMISLVPD DVGKPTFKLE KSEVKEGICS WENPIYVSVK LIKEPKTGIV REKIYHFVVA TGSSKSGFLG
101: EASIDFADFL TEADPLTVSL PLKFANSGAV LNVTIHKIQG ASDLKFIEEN KDQTLSKEDS FKSLQSNDDL EGYNQDERSL DVNTAKNAGL GGSFDSIGES
201: GWIDDGNARL PQRHNSVPAT RNGHRRSNTD WSASSTSDES YIESRNSPEN SFQRGFSSVT ESSDPIERLK MELEALRRQS ELSELEKQSL RKQAIKESKR
301: IQELSKEVSC LKGERDGAME ECEKLRLQNS RDEADAESRL RCISEDSSNM IEEIRDELSC EKDLTSNLKL QLQRTQESNS NLILAVRDLN EMLEQKNNEI
401: SSLNSLLEEA KKLEEHKGMD SGNNEIDTLK QQIEDLDWEL DSYKKKNEEQ EILLDELTQE YESLKEENYK NVSSKLEQQE CSNAEDEYLD SKDIIDELKS
501: QIEILEGKLK QQSLEYSECL ITVNELESQV KELKKELEDQ AQAYDEDIDT MMREKTEQEQ RAIKAEENLR KTRWNNAITA ERLQEKCKRL SLEMESKLSE
601: HENLTKKTLA EANNLRLQNK TLEEMQEKTH TEITQEKEQR KHVEEKNKAL SMKVQMLESE VLKLTKLRDE SSAAATETEK IIQEWRKERD EFERKLSLAK
701: EVAKTAQKEL TLTKSSNDDK ETRLRNLKTE VEGLSLQYSE LQNSFVQEKM ENDELRKQVS NLKVDIRRKE EEMTKILDAR MEARSQENGH KEENLSKLSD
801: ELAYCKNKNS SMERELKEME ERYSEISLRF AEVEGERQQL VMAVRNLKNG KKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)