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AT5G13720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0114)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0114); LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0114, plant (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0114) (TAIR:AT4G19390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHGGeggNOG:ENOG41121DMEMBL:AB006704EMBL:AY150387
EMBL:CP002688EnsemblPlants:AT5G13720EnsemblPlants:AT5G13720.1entrez:831217
GeneID:831217GO:GO:0009507GO:GO:0009706GO:GO:0009941
GO:GO:0016021Gramene:AT5G13720.1hmmpanther:PTHR31721hmmpanther:PTHR31721:SF1
IntAct:Q9FNA1InterPro:IPR005134InterPro:IPR016804KEGG:ath:AT5G13720
OMA:KVYWTSCPfam:PF03350PhylomeDB:Q9FNA1PIRSF:PIRSF022348
Proteomes:UP000006548RefSeq:NP_196876.1STRING:3702.AT5G13720.1TAIR:AT5G13720
TMHMM:TMhelixUniGene:At.43777UniGene:At.49018UniProt:Q9FNA1
Coordinates (TAIR10) chr5:+:4427960..4429029
Molecular Weight (calculated) 28913.50 Da
IEP (calculated) 9.11
GRAVY (calculated) 0.32
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSSLISAT PLSLSVPRYL VLPTRRRFHL PLATLDSSPP ESSASSSIPT SIPVNGNTLP SSYGTRKDDS PFAQFFRSTE SNVERIIFDF RFLALLAVGG
101: SLAGSLLCFL NGCVYIVEAY KVYWTNCSKG IHTGQMVLRL VEAIDVYLAG TVMLIFSMGL YGLFISHSPH DVPPESDRAL RSSSLFGMFA MKERPKWMKI
201: SSLDELKTKV GHVIVMILLV KMFERSKMVT IATGLDLLSY SVCIFLSSAS LYILHNLHKG ET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)