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AT4G38250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.797
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1304EMBL:AL035539EMBL:AL161593
EMBL:AY050451EMBL:AY087791EMBL:AY133541EMBL:CP002687
EnsemblPlants:AT4G38250EnsemblPlants:AT4G38250.1entrez:829982GeneID:829982
Genevisible:Q9SVG0GO:GO:0005886GO:GO:0006865GO:GO:0016021
Gramene:AT4G38250.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF305InParanoid:Q9SVG0
IntAct:Q9SVG0InterPro:IPR013057KEGG:ath:AT4G38250KO:K14209
OMA:IVERRFSPaxDb:Q9SVG0Pfam:PF01490Pfam:Q9SVG0
PhylomeDB:Q9SVG0PIR:T05653PRIDE:Q9SVG0PRO:PR:Q9SVG0
ProteinModelPortal:Q9SVG0Proteomes:UP000006548Reactome:R-ATH-352230Reactome:R-ATH-428559
RefSeq:NP_195538.1STRING:3702.AT4G38250.1TAIR:AT4G38250TMHMM:TMhelix
UniGene:At.24305UniGene:At.48952UniProt:Q9SVG0
Coordinates (TAIR10) chr4:+:17935533..17936843
Molecular Weight (calculated) 47213.70 Da
IEP (calculated) 6.66
GRAVY (calculated) 0.79
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFQNEASSS SYTLKIPPPA REDSPLLGKG PPLSSQFKTF ANVFIAVVGA GVLGLPYAFK RTGWLMGVLL LVSVSVLTHH CMMLLVYTRR KLDSFNAGIS
101: KIGSFGDLGF AVCGSLGRIV VDLFIILSQA GFCVGYLIFI GTTLANLSDP ESPTSLRHQF TRLGSEFLGV SSKSLYIWGC FPFQLGLNSI KTLTHLAPLS
201: IFADIVDLGA MAVVIVEDSM IILKQRPDVV AFGGMSLFLY GMGVAVYSFE GVGMVLPLES EMKDKDKFGK VLALGMGFIS LIYIAFGILG YLAFGEDTMD
301: IITANLGAGL VSTVVQLGLC INLFFTFPLM MNPVFEIVER RFSRGMYSAW LRWVLVLAVT LVALFVPNFA DFLSLVGSST CCVLGFVLPA LFHLLVFKEE
401: MGWLQWSSDT AIVVLGVVLA VSGTWSSLSE IFSVKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)