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AT4G00300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : fringe-related protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
fringe-related protein; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G01570.1); Has 958 Blast hits to 946 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 151; Plants - 707; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G00300-MONOMERCAZy:GT31eggNOG:ENOG410YRJGeggNOG:KOG2246EMBL:AF013293EMBL:AF195115EMBL:AL161471
EMBL:CP002687EnsemblPlants:AT4G00300EnsemblPlants:AT4G00300.1entrez:828072ExpressionAtlas:O23072GeneID:828072GO:GO:0005783
GO:GO:0016021Gramene:AT4G00300.1hmmpanther:PTHR10811hmmpanther:PTHR10811:SF17HOGENOM:HOG000114086InterPro:IPR006740InterPro:IPR024788
OMA:LMIPAKLPfam:PF04646Pfam:PF12819PhylomeDB:O23072PIR:T01541Proteomes:UP000006548RefSeq:NP_567166.1
STRING:3702.AT4G00300.1TAIR:AT4G00300TMHMM:TMhelixUniGene:At.44524UniProt:O23072
Coordinates (TAIR10) chr4:+:126509..130126
Molecular Weight (calculated) 88865.60 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.28
Length 785 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDQKTLSYD KSNKPFYSSS SSPCSFTAIV VFLIFVSYLL YSFSFISFLN PYSPSKSPNS LLVPVIRLGS GQTPEEQTEL KHIVFGIAAS SDLWKHRREY
101: VKTWWKPNGV MNGAVWLDKP INDTVSSSSA LPQIRISSDT SSFKYRYRNG HRSAIRITRI VSETVRMLNG TEAERNVRWV VMGDDDTVFF TENLVRVLRK
201: YDHKQFYYIG APSESHLQNL HQFSYGMAYG GGGFAISYPL AKVLEKMQDR CIERYSDLYG SDDRIHACMA ELGVPLTKEV GFHQFDVYGN LLGLLSVHPQ
301: APIVSIHHLD VVDPIFPKTN RVNALKKLMI PAKLDSASLV QQSVCYDKSH QWTMSISWGY TVQITRTYMP ARMMEVPTRT FNDWHLRSDF TNLAFNTRPV
401: TWTDCQRPRV FYFSHAFSNS SSSDTTTISQ YLRHDEWYPK CEWGIADPSE INQIFVYKKP TPDRWSKVVI RFVPSKDSNF AFVNAIEVIS APKDLIGDVA
501: TSVSHDGTEK FNGLAKQAME VVYRVNVGGR KVTPFNDTLW RTWVTDEGFL KTGDGSSEKS YFTGRIKYRR GGASREVGPD NVYNTARVGK RSNGLVDMSW
601: GFKVNVGYKY LIRMHFCDIA SKSLGRLYFN VYINGNLAYE DFDISYAADN VLASPYYIDF VVDATADDNN PSGSSITVSV GPSNKTSVDG NGVDAILNGV
701: EIMKMNNSMG SLDGYVSTEM ILSTCPNRRN LSIFIAMLAF MCIFMSFYIV TQRKRVKDQY GWTKLSMDVL EDNSKSGNQF TARKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)