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AT3G28470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
DEFECTIVE IN MERISTEM DEVELOPMENT AND FUNCTION 1 (TDF1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 103 (TAIR:AT5G56110.1); Has 8909 Blast hits to 8197 proteins in 475 species: Archae - 0; Bacteria - 0; Metazoa - 781; Fungi - 493; Plants - 5873; Viruses - 5; Other Eukaryotes - 1757 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AB026644EMBL:AF062877
EMBL:AY519591EMBL:CP002686EMBL:DQ446711EMBL:DQ653114
EnsemblPlants:AT3G28470EnsemblPlants:AT3G28470.1entrez:822477Gene3D:1.10.10.60
GeneID:822477Genevisible:Q9LSI7GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0048658GO:GO:0052545
GO:GO:0055046Gramene:AT3G28470.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF649
HOGENOM:HOG000237600InParanoid:Q9LSI7InterPro:IPR001005InterPro:IPR009057
InterPro:IPR017930KEGG:ath:AT3G28470KO:K09422OMA:ELIIECH
PaxDb:Q9LSI7Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9LSI7
PIR:T51649PRO:PR:Q9LSI7PROSITE:PS51294ProteinModelPortal:Q9LSI7
Proteomes:UP000006548RefSeq:NP_189488.1SMART:SM00717SMR:Q9LSI7
STRING:3702.AT3G28470.1SUPFAM:SSF46689TAIR:AT3G28470tair10-symbols:ATMYB35
tair10-symbols:TDF1UniGene:At.10904UniProt:Q9LSI7
Coordinates (TAIR10) chr3:-:10674579..10675724
Molecular Weight (calculated) 35814.70 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.67
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRPPCCDKS NVKKGLWTEE EDAKILAYVA IHGVGNWSLI PKKAGLNRCG KSCRLRWTNY LRPDLKHDSF STQEEELIIE CHRAIGSRWS SIARKLPGRT
101: DNDVKNHWNT KLKKKLMKMG IDPVTHKPVS QLLAEFRNIS GHGNASFKTE PSNNSILTQS NSAWEMMRNT TTNHESYYTN SPMMFTNSSE YQTTPFHFYS
201: HPNHLLNGTT SSCSSSSSST SITQPNQVPQ TPVTNFYWSD FLLSDPVPQV VGSSATSDLT FTQNEHHFNI EAEYISQNID SKASGTCHSA SSFVDEILDK
301: DQEMLSQFPQ LLNDFDY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)