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AT3G09070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF740)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF740); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF740 (InterPro:IPR008004); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF740) (TAIR:AT5G01170.1); Has 844 Blast hits to 758 proteins in 136 species: Archae - 0; Bacteria - 50; Metazoa - 319; Fungi - 62; Plants - 144; Viruses - 44; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
BioGrid:5394eggNOG:ENOG410IIMYeggNOG:ENOG410YBGZEMBL:AC009326EMBL:AK226807EMBL:CP002686EnsemblPlants:AT3G09070
EnsemblPlants:AT3G09070.1entrez:820060GeneID:820060Genevisible:Q9SS80GO:GO:0005886GO:GO:0009507GO:GO:0010088
GO:GO:0010233GO:GO:0010588GO:GO:0016324GO:GO:0022622Gramene:AT3G09070.1hmmpanther:PTHR31659hmmpanther:PTHR31659:SF8
HOGENOM:HOG000241470InParanoid:Q9SS80InterPro:IPR008004iPTMnet:Q9SS80KEGG:ath:AT3G09070ncoils:CoilOMA:TRADMQF
PaxDb:Q9SS80Pfam:PF05340Pfam:Q9SS80PhylomeDB:Q9SS80PRIDE:Q9SS80PRO:PR:Q9SS80ProteinModelPortal:Q9SS80
Proteomes:UP000006548RefSeq:NP_187519.1TAIR:AT3G09070UniGene:At.40173UniProt:Q9SS80
Coordinates (TAIR10) chr3:-:2768880..2770937
Molecular Weight (calculated) 75444.60 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.89
Length 685 amino acids
Sequence (TAIR10)
(BLAST)
001: MNPATDPVSA AAAALAPPPQ PPQPHRLSTS CNRHPEERFT GFCPSCLCER LSVLDQTNNG GSSSSSKKPP TISAAALKAL FKPSGNNGVG GVNTNGNGRV
101: KPGFFPELRR TKSFSASKNN EGFSGVFEPQ RRSCDVRLRS SLWNLFSQDE QRNLPSNVTG GEIDVEPRKS SVAEPVLEVN DEGEAESDDE ELEEEEEEDY
201: VEAGDFEILN DSGELMREKS DEIVEVREEI EEAVKPTKGL SEEELKPIKD YIDLDSQTKK PSVRRSFWSA ASVFSKKLQK WRQNQKMKKR RNGGDHRPGS
301: ARLPVEKPIG RQLRDTQSEI ADYGYGRRSC DTDPRFSLDA GRFSLDAGRF SVDIGRISLD DPRYSFDEPR ASWDGSLIGR TMFPPAARAP PPPSMLSVVE
401: DAPPPVHRHV TRADMQFPVE EPAPPPPVVN QTNGVSDPVI IPGGSIQTRD YYTDSSSRRR KSLDRSSSSM RKTAAAVVAD MDEPKLSVSS AISIDAYSGS
501: LRDNNNYAVE TADNGSFREP AMMIGDRKVN SNDNNKKSRR WGKWSILGLI YRKSVNKYEE EEEEEEDRYR RLNGGMVERS LSESWPELRN GGGGGGGPRM
601: VRSNSNVSWR SSGGGSARKV NGLDRRNKSS RYSPKNGENG MLKFYLPHMK ASRRMSGTGG AGGGGGGGWA NSHGHSIARS VMRLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)