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AT2G25520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Drug/metabolite transporter superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Drug/metabolite transporter superfamily protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G32390.1); Has 2445 Blast hits to 2439 proteins in 251 species: Archae - 0; Bacteria - 11; Metazoa - 512; Fungi - 442; Plants - 1237; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Protein Annotations
BioGrid:2442eggNOG:ENOG410XP1SeggNOG:KOG1441EMBL:AC006300
EMBL:AK317655EMBL:AY054267EMBL:AY056179EMBL:BT002645
EMBL:CP002685EnsemblPlants:AT2G25520EnsemblPlants:AT2G25520.1entrez:817090
GeneID:817090Genevisible:Q9SKJ7GO:GO:0005768GO:GO:0005794
GO:GO:0005802GO:GO:0008643GO:GO:0016021Gramene:AT2G25520.1
hmmpanther:PTHR11132hmmpanther:PTHR11132:SF95HOGENOM:HOG000170162InParanoid:Q9SKJ7
InterPro:IPR004853iPTMnet:Q9SKJ7KEGG:ath:AT2G25520ncoils:Coil
OMA:SWIFFSNPaxDb:Q9SKJ7Pfam:PF03151Pfam:Q9SKJ7
PhylomeDB:Q9SKJ7PIR:D84649PRIDE:Q9SKJ7PRO:PR:Q9SKJ7
ProteinModelPortal:Q9SKJ7Proteomes:UP000006548RefSeq:NP_180122.1STRING:3702.AT2G25520.1
SUPFAM:0043518TAIR:AT2G25520TCDB:2.A.7.9.17TMHMM:TMhelix
UniGene:At.13776UniProt:Q9SKJ7
Coordinates (TAIR10) chr2:+:10860950..10861993
Molecular Weight (calculated) 38662.90 Da
IEP (calculated) 9.29
GRAVY (calculated) 0.58
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKGRALSDG VIKKIILSYT YVAIWIFLSF TVIVYNKYIL DKKMYNWPFP ITLTMIHMGF CSSLAVILIK VFKVVEPVSM SRETYLRSVV PIGALYSLSL
101: WLSNSAYIYL SVSFIQMLKA LMPVAVYSIG VLLKKETFKS QTMTNMLSIS FGVAIAAYGE AKFDGWGVFL QLGAVAFEAT RLVLIQILLT SKGINLNPIT
201: SLYYVAPCCL VFLSVPWIFV EFPVLRDTSS FHFDFVIFGT NSVCAFALNL AVFLLVGKTS ALTMNVAGVV KDWLLIAFSW SVIKDTVTPI NLFGYGLAFL
301: GVGYYNHCKL QALKAKDAQK KVQASDDEAG KLLEERESEA KRNETQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)