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AT1G48170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 78 Blast hits to 78 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 30; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:841236eggNOG:ENOG410IU3TeggNOG:ENOG411223ZEMBL:AK228677
EMBL:AY070372EMBL:AY086896EMBL:AY133765EMBL:CP002684
EnsemblPlants:AT1G48170EnsemblPlants:AT1G48170.1entrez:841236GeneID:841236
GO:GO:0043248Gramene:AT1G48170.1hmmpanther:PTHR33559HOGENOM:HOG000244001
InterPro:IPR032157KEGG:ath:AT1G48170KO:K11878OMA:METEYDQ
Pfam:PF16093PhylomeDB:Q8VYQ0Proteomes:UP000006548RefSeq:NP_564522.1
TAIR:AT1G48170UniGene:At.15219UniProt:Q8VYQ0
Coordinates (TAIR10) chr1:+:17788810..17789635
Molecular Weight (calculated) 16598.00 Da
IEP (calculated) 8.02
GRAVY (calculated) 0.01
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: METEYDQVLR SVAQVNIADQ IGESDDVERD GNGVKVSCFT EVFDDVTIQF QIIRLAKQIY VWVGCNSAKF GSLYAAASTR PSNTVSVTSV LGGTSDNTGS
101: GIARRLVLKT GLNIILACNI PKNNPLLEAK AEKVLIRKLI DLGYTMSKPV RAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)