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AT1G12980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.
Computational
Description (TAIR10)
ENHANCER OF SHOOT REGENERATION 1 (ESR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DORNROSCHEN-like (TAIR:AT1G24590.1); Has 5974 Blast hits to 5668 proteins in 251 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 5957; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:23096eggNOG:ENOG410J198eggNOG:ENOG410YQHUEMBL:AC007357
EMBL:AF353577EMBL:CP002684EnsemblPlants:AT1G12980EnsemblPlants:AT1G12980.1
entrez:837856Gene3D:3.30.730.10GeneID:837856GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0006351
GO:GO:0009734GO:GO:0009735GO:GO:0009736GO:GO:0009873
GO:GO:0009880GO:GO:0009887GO:GO:0010084GO:GO:0048825
Gramene:AT1G12980.1hmmpanther:PTHR31677hmmpanther:PTHR31677:SF17HOGENOM:HOG000112399
InParanoid:Q9SAD4IntAct:Q9SAD4InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT1G12980OMA:NESFFPEPaxDb:Q9SAD4Pfam:PF00847
Pfam:Q9SAD4Pfscan:PS51032PIR:G86263PRIDE:Q9SAD4
PRINTS:PR00367PRO:PR:Q9SAD4PROSITE:PS51032ProteinModelPortal:Q9SAD4
Proteomes:UP000006548RefSeq:NP_172758.1SMART:SM00380SMR:Q9SAD4
STRING:3702.AT1G12980.1SUPFAM:SSF54171TAIR:AT1G12980tair10-symbols:DRN
tair10-symbols:ESR1UniGene:At.28308UniProt:Q9SAD4
Coordinates (TAIR10) chr1:+:4429791..4430777
Molecular Weight (calculated) 36320.90 Da
IEP (calculated) 9.08
GRAVY (calculated) -0.77
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKALRNFTE STHSPDPNPL TKFFTEPTAS PVSRNRKLSS KDTTVTIAGA GSSTTRYRGV RRRPWGRYAA EIRDPMSKER RWLGTFDTAE QAACAYDSAA
101: RAFRGAKART NFTYPTAVIM PEPRFSFSNK KSSPSARCPL PSLPLDSSTQ NFYGAPAAQR IYNTQSIFLR DASCSSRKTT PYNNSFNGSS SSYSASKTAC
201: VSYSENENNE SFFPEESSDT GLLQEVVQEF LKKNRGVPPS PPTPPPVTSH HDNSGYFSNL TIYSENMVQE TKETLSSKLD RYGNFQANDD GVRAVADGGL
301: SLGSNEWGYQ EMLMYGTQLG CTCRRSWG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)