suba logo
AT5G67000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G67010.1); Has 4646 Blast hits to 4643 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4641; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTHReggNOG:ENOG41107U1EMBL:AB026640EMBL:AY560859
EMBL:BT024702EMBL:CP002688EMBL:DQ145775EnsemblPlants:AT5G67000
EnsemblPlants:AT5G67000.1entrez:836835Gene3D:3.30.730.10GeneID:836835
Genevisible:Q38Q40GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009873Gramene:AT5G67000.1hmmpanther:PTHR31194
hmmpanther:PTHR31194:SF0HOGENOM:HOG000112333InterPro:IPR001471InterPro:IPR016177
InterPro:IPR017392iPTMnet:Q38Q40KEGG:ath:AT5G67000OMA:NDQNENF
PANTHER:PTHR31194PaxDb:Q38Q40Pfam:Q38Q40Pfscan:PS51032
PhylomeDB:Q38Q40PRIDE:Q38Q40PRINTS:PR00367PRO:PR:Q38Q40
PROSITE:PS51032ProteinModelPortal:Q38Q40Proteomes:UP000006548RefSeq:NP_201501.2
SMART:SM00380SMR:Q38Q40SUPFAM:SSF54171TAIR:AT5G67000
UniGene:At.64325UniGene:At.74244UniProt:Q38Q40
Coordinates (TAIR10) chr5:-:26746677..26747231
Molecular Weight (calculated) 20615.30 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.81
Length 184 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTPFCSSHH LQEKMNSCQS NPTKMDNSEN VLFNDQNENF TLVAPHPSSS YLTRDQEHEI MVSALRQVIS NSGADDASSS NLIITSVPPP DAGPCPLCGV
101: AGCYGCTLQR PHREVKKEKK YKGVRKKPSG KWAAEIWDPR SKSRRWLGTF LTAEMAAQSY NDAAAEYRAR RGKTNGEGIK RRWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)