AT5G61700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.934 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ABC2 homolog 16 | ||||||||||||
| Curator Summary (TAIR10) |
member of ATH subfamily | ||||||||||||
| Computational Description (TAIR10) |
ABC2 homolog 16 (ATH16); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 14 (TAIR:AT5G61740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24793864..24797944 | ||||||||||||
| Molecular Weight (calculated) | 98995.00 Da | ||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||
| Length | 888 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVNPSPASFW TQANALLRKN LTYQRKHIWT NVRLILVPLF LCLILLAIQQ VLDALMKGVS DMSNCGGNVT LPGGICPIPN PPSLPPMLQI PQHELRSVKT 101: DFFSYKDLPD KLCRETGSCP VTILFTGDKL PLGKALSANI FSTSFVVNSS DLLPTLANNV LGSTEAAGED NYEDPGIASD LPIYSIQPSC SANSTWPLSL 201: GQIQTAVKCV QGLCLWRNNS VEVNDELFKG SWRGNPAGMP NEIVAAYDLM STDRKNFNVT IWYNSTYNDE FATGQALKLV RVPRSINLIS NAYLKFLKGP 301: GTRILFEFLK EVPKEETKMN QDIASLLGPL FFTWVVLLLF PVILTSLVYE KQERLRIIMK MHGLGDGLKY FRRNDYSIQF VFYFIYSNLQ ISLAFLVSSI 401: FSKVKTVTVI AYILVYGTGL LGSFLFQKMI ETQSFPEEWI LAMELYPGFS LYRGLYEFSQ YASRGNGMKW QDLSDSGMGE VFCIMSVEWF LALIVAYYID 501: QVFTSGKHPF FFLVNLFKSP SSLPRRPTVQ RLDSKRVFID MDKHDVTQER ESVQKLRNEG STGHAILCDN LKKVYPGRDG NPPKMAVRGL YLSVSSGECF 601: GMLGPNGAGK TSFISMMTGL LKPSSGTALV QGLDICKDMN KVYTSMGVCP QHDLLWETLT GREHLLFYGR LKNIKGSDLT QAVEESLKSV SLYDGGVGDK 701: PAGNYSGGMK RRLSVAISLI GNPKVVYLDE PSTGLDPASR KNLWNVIKRA KQNTAIILTT HSMEEAEFLC DRLGIFVDGG LQCIGNSKEL KSRYGGSYVF 801: TMTTSSKHEE EVERLVESVS PNAKKIYHLA GTQKFELPKQ EVRIAEVFRA VEKAKANFTV FAWGLADTTL EDVFIKVART AQAFISLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)