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AT5G61620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : myb-like transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCECeggNOG:ENOG4111IMAEMBL:AB012239EMBL:CP002688
EnsemblPlants:AT5G61620EnsemblPlants:AT5G61620.1entrez:836284Gene3D:1.10.10.60
GeneID:836284GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008270Gramene:AT5G61620.1
hmmpanther:PTHR12374hmmpanther:PTHR12374:SF19HOGENOM:HOG000152521InterPro:IPR001005
InterPro:IPR001878InterPro:IPR006447InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT5G61620OMA:GHNGHNAPfam:PF00249Pfscan:PS50158
Pfscan:PS51294PhylomeDB:Q9FKF9PROSITE:PS50158PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_200970.1SMART:SM00717SMR:Q9FKF9
SUPFAM:SSF46689TAIR:AT5G61620TIGRfam:TIGR01557TIGRFAMs:TIGR01557
UniGene:At.55665UniProt:Q9FKF9
Coordinates (TAIR10) chr5:+:24772383..24773507
Molecular Weight (calculated) 35015.60 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.66
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE VTALRKSLSL GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT
101: AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI
201: QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
301: QATGASDLTG HGVIHVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)