AT5G44250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function DUF829, transmembrane 53 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function DUF829, transmembrane 53; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, transmembrane 53 (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF829, transmembrane 53 (TAIR:AT2G15695.1); Has 221 Blast hits to 219 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 6; Plants - 101; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:17823876..17825620 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45441.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 403 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWGIGGNYYW RKKNNNGGES EAIVVVFAWM SSEERNLKNH VDLYSSLLWD SLVCHSQFLN MFLPDKAADL ASNVVSELVK ELKAKPVPLV FASFSGGPNA 101: CMYKVLQILE GTCETGLNPD DCRLVRNCIS GFIYDSCPVD FTSDLGARLA VHPTTLKMSS PPKPFVWAAN GIASSLDYVF LNRFESQRAE YWQTLYSTII 201: MRVPYLILCS ENDDLAPYQT IHNFATRLQE LGGNVKLVKW NDSPHCGHYR YNQVDYKAAV SEFLSKAASV YSQKTRSLDR EAMKGTCHDE ITEPIQSLGQ 301: STSGLNRSFN GTPLVTTDHF FVPSTVGYYV GRDGGYVQDE HKQDLICLSN TQTNESVKPN GVLGQILFDV YIPKNVEDWD IKLSETGRSR RRPGKRFIRR 401: SRL |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)