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AT5G41810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64340.1); Has 876 Blast hits to 690 proteins in 132 species: Archae - 0; Bacteria - 38; Metazoa - 180; Fungi - 112; Plants - 59; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J700eggNOG:ENOG410ZGZJEMBL:AB016871EMBL:AY081740
EMBL:CP002688EnsemblPlants:AT5G41810EnsemblPlants:AT5G41810.1entrez:834186
ExpressionAtlas:Q9FJ33GeneID:834186Gramene:AT5G41810.1hmmpanther:PTHR33978
hmmpanther:PTHR33978:SF4ncoils:CoilOMA:RTMSMSHPhylomeDB:Q9FJ33
Proteomes:UP000006548RefSeq:NP_851118.1TAIR:AT5G41810UniGene:At.26146
UniProt:Q9FJ33
Coordinates (TAIR10) chr5:+:16738302..16739474
Molecular Weight (calculated) 32182.80 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.98
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIKVKAKDV ESTMMSTKEE DEIKKMKECV VIQKADEEVT KGQETMKILD GSRQNQDETR QADSKNIDSP SSSSLEMKKK LEIDQKFTSQ NEENTKKEEE
101: KKKETNNNNL SNMKHKKTSS HVWDCGSTLY DSFELNSFKR QLDSAISASS ARTMSMSHLP DRRIPSLSSL SPEYSPPLPP PPTTSSSSSS GGKKHSNKIS
201: RSLQRFLKSM FKPKQHQSLT TPSSPVYKAV GHGGGDKDRY YVVYDKSGSL TTIPESTEKE VSPEINSLVR KTVSERFPAS RVVGISCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)