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AT5G40650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : succinate dehydrogenase 2-2
Curator
Summary (TAIR10)
One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth.
Computational
Description (TAIR10)
succinate dehydrogenase 2-2 (SDH2-2); CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Fumarate reductase, C-terminal (InterPro:IPR012285), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), Alpha-helical ferredoxin (InterPro:IPR009051), Succinate dehydrogenase/fumarate reductase iron-sulphur protein (InterPro:IPR004489); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 2-1 (TAIR:AT3G27380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G40650-MONOMERBRENDA:1.3.5.1EC:1.3.5.1eggNOG:COG0479
eggNOG:KOG3049EMBL:AB009052EMBL:AJ278911EMBL:AY074299
EMBL:AY087504EMBL:AY123036EMBL:CP002688EnsemblPlants:AT5G40650
EnsemblPlants:AT5G40650.1entrez:834065Gene3D:3.10.20.30GeneID:834065
Genevisible:Q8LB02GO:GO:0000104GO:GO:0005739GO:GO:0005749
GO:GO:0006099GO:GO:0006121GO:GO:0008177GO:GO:0008270
GO:GO:0009055GO:GO:0045273GO:GO:0045281GO:GO:0051537
GO:GO:0051538GO:GO:0051539Gramene:AT5G40650.1hmmpanther:PTHR11921
hmmpanther:PTHR11921:SF29HOGENOM:HOG000160590InParanoid:Q8LB02IntAct:Q8LB02
InterPro:IPR001041InterPro:IPR004489InterPro:IPR006058InterPro:IPR009051
InterPro:IPR012675InterPro:IPR017896InterPro:IPR017900InterPro:IPR025192
KEGG:00020+1.3.5.1KEGG:00190+1.3.5.1KEGG:00650+1.3.5.1KEGG:00720+1.3.5.1
KEGG:ath:AT5G40650KO:K00235OMA:IDSHERMPaxDb:Q8LB02
Pfam:PF13085Pfam:PF13534Pfam:Q8LB02Pfscan:PS51085
Pfscan:PS51379PhylomeDB:Q8LB02PRIDE:Q8LB02PRO:PR:Q8LB02
PROSITE:PS00197PROSITE:PS00198PROSITE:PS51085PROSITE:PS51379
ProteinModelPortal:Q8LB02Proteomes:UP000006548RefSeq:NP_198881.1scanprosite:PS00197
scanprosite:PS00198SMR:Q8LB02STRING:3702.AT5G40650.1SUPFAM:SSF46548
SUPFAM:SSF54292SwissPalm:Q8LB02TAIR:AT5G40650tair10-symbols:SDH2-2
TIGRfam:TIGR00384TIGRFAMs:TIGR00384UniGene:At.20145UniGene:At.67187
UniGene:At.7421UniPathway:UPA00223UniProt:Q8LB02
Coordinates (TAIR10) chr5:+:16281462..16283296
Molecular Weight (calculated) 31142.60 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.42
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFGLIGRVV GTKSSRLSTA ARLIPARWTS TGSEAQSKAS TGGGGASLKT FQIYRWNPDN PGKPELQDYK IDLKDCGPMV LDALIKIKNE MDPSLTFRRS
101: CREGICGSCA MNIDGCNGLA CLTKIESGSK ETTITPLPHM FVIKDLVVDM TNFYNQYKSI EPWLKRKNPA SVPGKEILQS KKDRAKLDGM YECILCACCS
201: TSCPSYWWNP ESYLGPAALL HANRWISDSR DEYTKERLEA IDDEFKLYRC HTILNCARAC PKGLNPGKQI THIKQLQKSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)