AT5G25470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.676 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AP2/B3-like transcriptional factor family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G25475.3); Has 141 Blast hits to 140 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:8865854..8867234 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32024.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.42 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLPRNATDKI QGNVSKPCFW KSLSPGQNWK SKSMRSFPEE FVKSTPGAFE HRVVFSVRWG NSWQLWLERE EKDLFMIEED WDEFVDDNHL GPNDNVFFRH 101: DDKMFLEVQI FKNDGNEIID APPEVEPETE PFHPTTPKNS HKETTTASAS ASASEFSDNW RETHGCADIK NPELYLLNPK NPYFVKTLTK GNDVLYVPKT 201: VIKKYGLKFG PHLSPMHYLL PGDKINGSTK IYGGGSAPCF NGWVDLCRKY NLKTGDSMVC ELERSGELVT AVRVHFINKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)