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AT5G22440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L1p/L10e family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT1G08360.1); Has 4875 Blast hits to 4874 proteins in 1649 species: Archae - 280; Bacteria - 2611; Metazoa - 459; Fungi - 187; Plants - 522; Viruses - 0; Other Eukaryotes - 816 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0081eggNOG:KOG1570EMBL:AB007651EMBL:AY037253
EMBL:AY077657EMBL:CP002688EMBL:F19997EnsemblPlants:AT5G22440
EnsemblPlants:AT5G22440.1EnsemblPlants:AT5G22440.2entrez:832305Gene3D:3.30.190.20
Gene3D:3.40.50.790GeneID:832305Genevisible:P59231GO:GO:0003723
GO:GO:0003735GO:GO:0005730GO:GO:0006412GO:GO:0022625
GO:GO:0022626Gramene:AT5G22440.1Gramene:AT5G22440.2hmmpanther:PTHR23105
hmmpanther:PTHR23105:SF48HOGENOM:HOG000207014InParanoid:P59231InterPro:IPR002143
InterPro:IPR016094InterPro:IPR016095InterPro:IPR023673InterPro:IPR023674
InterPro:IPR028364KEGG:ath:AT5G22440KO:K02865OMA:ELNANIM
PaxDb:P59231Pfam:P59231Pfam:PF00687PhylomeDB:P59231
PIRSF:PIRSF002155PRIDE:P59231PRO:PR:P59231PROSITE:PS01199
ProteinModelPortal:P59231Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_001078612.1RefSeq:NP_197636.1scanprosite:PS01199SMR:P59231
STRING:3702.AT5G22440.1SUPFAM:SSF56808TAIR:AT5G22440UniGene:At.7367
UniProt:P59231
Coordinates (TAIR10) chr5:-:7435328..7436486
Molecular Weight (calculated) 24533.50 Da
IEP (calculated) 10.57
GRAVY (calculated) -0.36
Length 217 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKLQSEAVR EAISSIITHC KETKPRNFTE TIELQIGLKN YDPQKDKRFS GSVKLPHVPR PKMKICMLGD AQHVEEAEKI GLESMDVEAL KKLNKNKKLV
101: KKLAKKFHAF LASESVIKQI PRLLGPGLNK AGKFPTLVSH QESLESKVNE TKATVKFQLK KVLCMGVAVG NLSMEEKQIF QNVQMSVNFL VSLLKKNWQN
201: VRCLYLKSTM GPPNRVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)