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AT5G16120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.911
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G77420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1882-MONOMEReggNOG:COG2267eggNOG:KOG1455EMBL:AF360219
EMBL:AY051019EMBL:CP002688EnsemblPlants:AT5G16120EnsemblPlants:AT5G16120.1
entrez:831469ESTHER:arath-At5g16120ExpressionAtlas:Q9C5I9Gene3D:3.40.50.1820
GeneID:831469GO:GO:0016787Gramene:AT5G16120.1gramene_pathway:4.3.1.18
gramene_pathway:PWY-6196hmmpanther:PTHR11614hmmpanther:PTHR11614:SF86HOGENOM:HOG000003228
InterPro:IPR000073InterPro:IPR022742InterPro:IPR029058MEROPS:S33.A05
Pfam:PF12146PhylomeDB:Q9C5I9PRINTS:PR00111Proteomes:UP000006548
Reactome:R-ATH-1482883Reactome:R-ATH-426048RefSeq:NP_568327.1SMR:Q9C5I9
STRING:3702.AT5G16120.2SUPFAM:SSF53474TAIR:AT5G16120UniGene:At.23932
UniProt:Q9C5I9
Coordinates (TAIR10) chr5:+:5266048..5267775
Molecular Weight (calculated) 39286.40 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.20
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPTATLDNN EELRRLREVN IDEAPGRRRV RDSLKDIQLN LDHILFKTPE NGIKTKESFE VNSRGVEIFS KSWLPEASKP RALVCFCHGY GDTCTFFFEG
101: IARRLALSGY GVFAMDYPGF GLSEGLHGYI PSFDLLVQDV IEHYSNIKAN PEFSSLPSFL FGQSMGGAVS LKIHLKQPNA WAGAVLLAPM CKIADDLVPP
201: PVLKQILIGL ANVLPKHKLV PQKDLAEAGF RDIRKRDMTP YNMICYSGKP RLRTAVEMLR TTQDIEKQLQ EVSLPILILH GEADTVTDPS VSRELYEKAK
301: SPDKKIVLYE NAYHSLLEGE PDDMILRVLS DIISWLNDHS LQAEGSSVTT M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)