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AT5G09780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G35310.1); Has 349 Blast hits to 326 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB020752EMBL:AL353994EMBL:CP002688EMBL:DQ056675
EnsemblPlants:AT5G09780EnsemblPlants:AT5G09780.1entrez:830838Gene3D:2.40.330.10
GeneID:830838Genevisible:Q9LXE1GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT5G09780.1hmmpanther:PTHR31920
hmmpanther:PTHR31920:SF20HOGENOM:HOG000131629InParanoid:Q9LXE1InterPro:IPR003340
InterPro:IPR015300iPTMnet:Q9LXE1KEGG:ath:AT5G09780PaxDb:Q9LXE1
Pfam:PF02362Pfam:Q9LXE1Pfscan:PS50863PhylomeDB:Q9LXE1
PIR:T49920PRIDE:Q9LXE1PRO:PR:Q9LXE1PROSITE:PS50863
ProteinModelPortal:Q9LXE1Proteomes:UP000006548RefSeq:NP_196540.1SMART:SM01019
STRING:3702.AT5G09780.1SUPFAM:SSF101936TAIR:AT5G09780UniGene:At.54791
UniProt:Q9LXE1
Coordinates (TAIR10) chr5:-:3036956..3038484
Molecular Weight (calculated) 35624.60 Da
IEP (calculated) 10.39
GRAVY (calculated) -0.74
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNPDFLWC KEERKQESFF KVLKRSDMSS EDTRAIPYDF VINFSDNELS GDMKFRVQWG NSWKVKISKN PRFYFMEKSG WEKFVIDNAL GDHEFLTFTH
101: KGQMSFTVKI FNKDGKEMMQ PPQSRASFAS SSRVKTEQDV KREEEVLVSS DSRSRGPTTA AETNRGGSYK RKLNFGKKKA EETQTYKRTE RTQNSKRTER
201: VVSKERVYAG EPSSSVAGFK IFISKSYIKS LAIPKPFGNY MPKEKTRVKI HHPDGEKTWK VVFVVKERGQ IFSGGWKRLC KEYPVVFGDT CKFTLITPLE
301: LLLVVSKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)