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AT4G32290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.963
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G25330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVI1eggNOG:ENOG41116B8EMBL:AK228649EMBL:AL021811
EMBL:AL161580EMBL:BT029553EMBL:CP002687EMBL:KJ138728
EnsemblPlants:AT4G32290EnsemblPlants:AT4G32290.1entrez:829363GeneID:829363
GO:GO:0008375GO:GO:0016020GO:GO:0016757Gramene:AT4G32290.1
hmmpanther:PTHR31042hmmpanther:PTHR31042:SF9HOGENOM:HOG000237469InterPro:IPR003406
KEGG:ath:AT4G32290OMA:WTVNDGGPfam:PF02485PhylomeDB:O49362
PIR:T05399Proteomes:UP000006548RefSeq:NP_194956.1TAIR:AT4G32290
UniGene:At.4595UniProt:O49362
Coordinates (TAIR10) chr4:-:15589839..15590993
Molecular Weight (calculated) 44044.30 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.17
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MISPTLFPLL CALFLCLPVA VIFTVQRELT CVISPEFGFR SLSVFSLYSR NVPDSSSSSP AVRIRQPIPK EDDPLLRLSS RVNPNLPPGS TRKIAFMYLT
101: TSPLPFAPLW EMFFDGISKN LYNVYVHADP TREYDPPFSG VFLNRVIHSK PSLRHTPTLT AAARRLLAHA LLDDPLNYMF AVISPSCVPI RSFDFTYKTL
201: VSSRKSFIEI LKDEPWQFDR WTAIGRHAML PEVKLEEFRI GSQFWVLKRR HARVVARDRR IWVKFNQTCV REDSCYPEES YFPTLLNMRD PRGCVPATLT
301: HVDWTVNDGG HPRMYEPEEV VPELVLRLRK TRPRYGEDGI NGSEWSKVER MDPFLFARKF SPQALEPLLG MARTVLFNDS AGGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)