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AT4G23790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 24
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 24 (TBL24); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 23 (TAIR:AT4G11090.1); Has 1329 Blast hits to 1312 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1325; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFB9eggNOG:ENOG410XSGAEMBL:AL035394EMBL:AL161560
EMBL:AY142519EMBL:CP002687EnsemblPlants:AT4G23790EnsemblPlants:AT4G23790.1
entrez:828479GeneID:828479GO:GO:0005794GO:GO:0016021
GO:GO:0016413GO:GO:0071554Gramene:AT4G23790.1hmmpanther:PTHR32285
hmmpanther:PTHR32285:SF40HOGENOM:HOG000238130InParanoid:Q8H1R3InterPro:IPR025846
InterPro:IPR026057InterPro:IPR029962KEGG:ath:AT4G23790OMA:FQNGEWH
PANTHER:PTHR32285PaxDb:Q8H1R3Pfam:PF13839Pfam:PF14416
Pfam:Q8H1R3PhylomeDB:Q8H1R3PIR:T05611PRIDE:Q8H1R3
PRO:PR:Q8H1R3ProteinModelPortal:Q8H1R3Proteomes:UP000006548RefSeq:NP_194110.2
STRING:3702.AT4G23790.1TAIR:AT4G23790tair10-symbols:TBL24TMHMM:TMhelix
UniGene:At.32404UniProt:Q8H1R3
Coordinates (TAIR10) chr4:+:12387870..12389659
Molecular Weight (calculated) 49570.10 Da
IEP (calculated) 6.10
GRAVY (calculated) -0.31
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLKLSSISM NHKNVLLIKL ISAILISFFA FRLFILHSSE FSPIFASVTG KFEARFLPPE IIVPENEDLI PQDIEVEKCD LFAGKWIPDS VGPIYTNKSC
101: GSLIDGHQNC ITNGRPDLDF LYWKWKPHDC LLPRFDPRRF LQLMRHKSWA FIGDSISRNH VESLLCMLST IEEPVEVYHD MEYKSKRWHF PLHNLTVSNI
201: WSPFLVQAAI FEDSNGVSTA SVQLHLDRLD ETWTSLMPSF DYAIISTGKW FLKSAIYHEN AKLVGCHNCQ EKPHIEELGF DYAYNASLHN VMDFLAAEDN
301: SKGTVFFRTS TPDHFQNGEW HSGGTCKQTE PVSDEEIEIK DVHKILKDIE IDQFKRAVRE KTNQDGGNLK LLDFTRMLLT RPDGHPGEYR QFRPFDKDKN
401: AKVQNDCLHW CLPGPFDYLN DVILETIVNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)