AT4G19150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT2G03430.1); Has 81213 Blast hits to 28344 proteins in 1181 species: Archae - 93; Bacteria - 6443; Metazoa - 41453; Fungi - 7183; Plants - 4369; Viruses - 872; Other Eukaryotes - 20800 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10471578..10472677 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25525.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.61 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||
| Length | 243 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGRSGGGRG GGGGGASADL HSAARSGDLA AVQSIISSNP LAVNSRDKHS RTPLHLAAWA GHNEVVSYLC KNKADVGAAA GDDMGAIHFA SQKGHLEVVR 101: TLLSAGGSVK SITRKGLTPL HYAAQGSHFE IVKYLVKKGA SVRATTKAGK SPADVAGNAE TQNFLEECEE QARKAKVNNE KKTEIVKPES CSNEGDVKDL 201: KRKDSEDGNE GEEEEASSKP KKPKVALSHL QDIDDTEADQ EEE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)