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AT4G18590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G52630.2); Has 94 Blast hits to 94 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:12884DNASU:827591eggNOG:ENOG410J16FeggNOG:ENOG410YSBX
EMBL:AL021710EMBL:AL161549EMBL:BT012205EMBL:BT012366
EMBL:CP002687EnsemblPlants:AT4G18590EnsemblPlants:AT4G18590.1entrez:827591
Gene3D:2.40.50.140GeneID:827591Genevisible:Q6NLG7GO:GO:0003677
GO:GO:0005634GO:GO:0006260GO:GO:0006281GO:GO:0006310
Gramene:AT4G18590.1hmmpanther:PTHR31614hmmpanther:PTHR31614:SF8HOGENOM:HOG000265081
InParanoid:Q6NLG7InterPro:IPR012340InterPro:IPR013970KEGG:ath:AT4G18590
KO:K10740OMA:ANGEFRHPaxDb:Q6NLG7Pfam:PF08661
Pfam:Q6NLG7PhylomeDB:Q6NLG7PIR:T04555PRIDE:Q6NLG7
PRO:PR:Q6NLG7ProteinModelPortal:Q6NLG7Proteomes:UP000006548RefSeq:NP_567560.2
STRING:3702.AT4G18590.1SUPFAM:SSF50249TAIR:AT4G18590UniGene:At.32888
UniProt:Q6NLG7
Coordinates (TAIR10) chr4:+:10236524..10236940
Molecular Weight (calculated) 11716.90 Da
IEP (calculated) 5.03
GRAVY (calculated) -0.10
Length 106 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTSSPAAFV NGALLRRYIG QKVRAVIQVI RSDVGSVIGK STDDQQIVVK GSPQPPLTTY LEVIGIAETD NTIRAEVWTN FGDSFDVQNY NELCKLANGE
101: FRHLFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)