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AT4G18020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CheY-like two-component responsive regulator family protein
Curator
Summary (TAIR10)
Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).
Computational
Description (TAIR10)
APRR2; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: GBF's pro-rich region-interacting factor 1 (TAIR:AT2G20570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12820eggNOG:COG5641eggNOG:KOG1601EMBL:AB041531
EMBL:AF385725EMBL:AL021889EMBL:AL161547EMBL:AY143963
EMBL:CP002687EnsemblPlants:AT4G18020EnsemblPlants:AT4G18020.1EnsemblPlants:AT4G18020.2
EnsemblPlants:AT4G18020.3EnsemblPlants:AT4G18020.6entrez:827527Gene3D:1.10.10.60
GeneID:827527Genevisible:Q6LA43GO:GO:0000160GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351hmmpanther:PTHR31312
hmmpanther:PTHR31312:SF2HOGENOM:HOG000005909InParanoid:Q6LA43IntAct:Q6LA43
InterPro:IPR001005InterPro:IPR001789InterPro:IPR006447InterPro:IPR009057
InterPro:IPR011006InterPro:IPR017930KEGG:ath:AT4G18020OMA:TIMISTD
PaxDb:Q6LA43Pfam:PF00072Pfam:PF00249Pfam:Q6LA43
Pfscan:PS50110Pfscan:PS51294PhylomeDB:Q6LA43PIR:T05088
PRIDE:Q6LA43PRO:PR:Q6LA43PROSITE:PS50110PROSITE:PS51294
ProteinModelPortal:Q6LA43Proteomes:UP000006548RefSeq:NP_001078405.1RefSeq:NP_001154250.1
RefSeq:NP_001190759.1RefSeq:NP_567548.1RefSeq:NP_849403.1RefSeq:NP_849404.2
SMR:Q6LA43STRING:3702.AT4G18020.1SUPFAM:SSF46689SUPFAM:SSF52172
TAIR:AT4G18020tair10-symbols:APRR2tair10-symbols:PRR2TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.25394UniProt:Q6LA43
Coordinates (TAIR10) chr4:-:10003738..10006682
Molecular Weight (calculated) 59405.20 Da
IEP (calculated) 5.72
GRAVY (calculated) -0.59
Length 535 amino acids
Sequence (TAIR10)
(BLAST)
001: MVITANDLSK WENFPKGLKV LLLLNGCDSD GDGSSAAETR SELESMDYIV TTFTDETEAL SAVVKNPESF HIAIVEVNMS AESESFKFLE AAKDVLPTIM
101: ISTDHCITTT MKCIALGAVE FLQKPLSPEK LKNIWQHVVH KAFNDGGSNV SISLKPVKES VVSMLHLETD MTIEEKDPAP STPQLKQDSR LLDGDCQENI
201: NFSMENVNSS TEKDNMEDHQ DIGESKSVDT TNRKLDDDKV VVKEERGDSE KEEEGETGDL ISEKTDSVDI HKKEDETKPI NKSSGIKNVS GNKTSRKKVD
301: WTPELHKKFV QAVEQLGVDQ AIPSRILELM KVGTLTRHNV ASHLQKFRQH RKNILPKDDH NHRWIQSREN HRPNQRNYNV FQQQHRPVMA YPVWGLPGVY
401: PPGAIPPLWP PPLQSIGQPP PWHWKPPYPT VSGNAWGCPV GPPVTGSYIT PSNTTAGGFQ YPNGAETGFK IMPASQPDEE MLDQVVKEAI SKPWLPLPLG
501: LKPPSAESVL AELTRQGISA VPSSSCLING SHRLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)