AT4G14980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: shoot apex, root, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G54050.1); Has 1362 Blast hits to 671 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 21; Fungi - 11; Plants - 1277; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8561970..8563607 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62331.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||
| Length | 545 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSTESEIET RPNLLVPLHE HPLSCTEEFI YSCDFCNSRN GIAYQCTECG YRLHKDCIQG FLSYPSPCGH SLKISMPNKS PQYANDRCHF CLCKLKTPFA 101: RCTVCNINIS PLCMVKQPPL TICNPKHHKH SLTLLVRLVI FTCNACGVEG DRNPYVCLQC NLMVHKDCIE NLPRVICINR HDHRIFHTFH LGQREEHWEC 201: GVCRKTVDWV YGAFKCSRCP NYAVHSRCAT KKEVWDGIEL EDVPEEEEEV EEPFVVINEK EIIHFSHEEH VLRLDENYVT DNVNMRCRGC VLAINGDSCY 301: KCVECDYILH KACASLPRKK RHLLHNHKLT LQVDEAASSD FVCTACRTYS NGFRYKCFEG CEDDVVYDVR CSSVSEPFQH DLHPHPLYWT LESSKRCQAC 401: GTETDDNLLN CTVCDDYALC MKCATLPRKV KHRCDDHFLS LCQGVGNASG NLWCDICETK TDPNVCYYTC EECGLSLHLN CVLGDFYYVK VIPDQPKVFA 501: NNGVTRLFCG VCEVRCKFPF IMWGAVGDFT GYVCSINCVF PKADK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)