AT4G04340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ERD (early-responsive to dehydration stress) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ERD (early-responsive to dehydration stress) family protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT4G22120.6); Has 1468 Blast hits to 1288 proteins in 193 species: Archae - 0; Bacteria - 4; Metazoa - 185; Fungi - 720; Plants - 437; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:2123235..2126624 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87612.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 772 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATLKDIGVS AGINILTAFI FFIIFAFLRL QPFNDRVYFS KWYLRGLRSS PASGGGFAGR FVNLELRSYL KFLHWMPEAL KMPERELIDH AGLDSVVYLR 101: IYWLGLKIFA PIAMLAWAVL VPVNWTNNEL ELAKHFKNVT SSDIDKLTIS NIPEGSNRFW AHIIMAYAFT IWTCYMLMKE YETVANMRLQ FLASEGRRPD 201: QFTVLVRNVP PDPDETVSEL VEHFFLVNHP DNYLTHQVVC NANKLADLVS KKTKLQNWLD YYQLKYTRNN SQIRPITKLG CLGLCGQKVD AIEHYIAEVD 301: KTSKEIAEER ENVVNDQKSV MPASFVSFKT RWAAAVCAQT TQTRNPTEWL TEWAAEPRDI YWPNLAIPYV SLTVRRLVMN VAFFFLTFFF IIPIAFVQSL 401: ATIEGIEKVA PFLKVIIEKD FIKSLIQGLL AGIALKLFLI FLPAILMTMS KFEGFTSVSF LERRSASRYY IFNLVNVFLG SVIAGAAFEQ LNSFLNQSPN 501: QIPKTIGMAI PMKATFFITY IMVDGWAGVA GEILMLKPLI IYHLKNAFLV KTEKDREEAM NPGSIGFNTG EPQIQLYFLL GLVYAPVTPM LLPFILVFFA 601: LAYVVYRHQI INVYNQEYES AAAFWPDVHG RVITALIISQ LLLMGLLGTK HAASAAPFLI ALPVITIGFH RFCKGRFEPA FVRYPLQEAM MKDTLERARE 701: PNLNLKGYLQ DAYIHPVFKG GDNDDDGDMI GKLENEVIIV PTKRQSRRNT PAPSRISGES SPSLAVINGK EV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)