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AT4G00810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
  • PMID:17934214 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2192 Blast hits to 2192 proteins in 389 species: Archae - 91; Bacteria - 0; Metazoa - 852; Fungi - 488; Plants - 457; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2058eggNOG:KOG1762EMBL:AK316887EnsemblPlants:AT4G00810
EnsemblPlants:AT4G00810.1EnsemblPlants:AT4G00810.2entrez:828004ExpressionAtlas:B9DFS7
GeneID:828004GO:GO:0003735GO:GO:0005840GO:GO:0006414
Gramene:AT4G00810.1Gramene:AT4G00810.2HAMAP:MF_01478hmmpanther:PTHR21141
InterPro:IPR027534iPTMnet:B9DFS7KEGG:ath:AT4G00810KO:K02942
OMA:IEVESFWPaxDb:B9DFS7Pfam:O23095Pfam:PF00428
PhylomeDB:B9DFS7PRIDE:B9DFS7ProteinModelPortal:B9DFS7RefSeq:NP_567190.1
RefSeq:NP_849278.1SMR:B9DFS7STRING:3702.AT4G00810.1TAIR:AT4G00810
UniGene:At.19113UniGene:At.21221UniGene:At.67853UniProt:B9DFS7
UniProt:O23095
Coordinates (TAIR10) chr4:-:346179..346957
Molecular Weight (calculated) 11307.40 Da
IEP (calculated) 3.95
GRAVY (calculated) 0.16
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVGELACS YAVMILEDEG IAITSDKIAT LVKAAGVEIE SYWPMLFAKM AEKRNVTDLI MNVGAGGGGG GAPVSAAAPA AAGGAAAAAP AKEEKKDEPA
101: EESDGDLGFG LFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)