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AT4G00416.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : methyl-CPG-binding domain 3
Curator
Summary (TAIR10)
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.
Computational
Description (TAIR10)
methyl-CPG-binding domain 3 (MBD3); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 4 (TAIR:AT3G63030.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111HPQeggNOG:KOG4161EMBL:AF013293EMBL:AF195115
EMBL:AL161471EMBL:CP002687EMBL:DQ056635EnsemblPlants:AT4G00416
EnsemblPlants:AT4G00416.1entrez:828069Gene3D:3.30.890.10GeneID:828069
Genevisible:Q4PSK1GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008327GO:GO:0046872Gramene:AT4G00416.1hmmpanther:PTHR12396
HOGENOM:HOG000241427InParanoid:Q4PSK1InterPro:IPR001739InterPro:IPR016177
KEGG:ath:AT4G00416OMA:AQCWKCLPaxDb:Q4PSK1Pfam:PF01429
Pfam:Q4PSK1Pfscan:PS50982PhylomeDB:Q4PSK1PRO:PR:Q4PSK1
PROSITE:PS50982ProteinModelPortal:Q4PSK1Proteomes:UP000006548RefSeq:NP_567177.1
SMR:Q4PSK1STRING:3702.AT4G00416.1SUPFAM:SSF54171TAIR:AT4G00416
tair10-symbols:MBD3UniGene:At.54061UniProt:Q4PSK1
Coordinates (TAIR10) chr4:+:179022..179513
Molecular Weight (calculated) 19103.90 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.69
Length 163 amino acids
Sequence (TAIR10)
(BLAST)
001: MCVVKTTLID SYAAQCWKCL KVRSIESQED YEEIRSKTLE KFFECKRCEE PGDMVMNFDS LTMRWFQDEH SIPKTPQGLK RVLVVRTNCV KVDVYYESLA
101: PRRKRFKSIK EVATFIEDKE EFKDMTLEEV SFAAPKRLKL KKKPVDSHSS SRNTEEDGVS RDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)