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AT3G56380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : response regulator 17
Curator
Summary (TAIR10)
response regulator 17
Computational
Description (TAIR10)
response regulator 17 (RR17); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 16 (TAIR:AT2G40670.1); Has 39813 Blast hits to 39289 proteins in 2430 species: Archae - 260; Bacteria - 34490; Metazoa - 15; Fungi - 615; Plants - 1410; Viruses - 6; Other Eukaryotes - 3017 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0784eggNOG:ENOG410IMXREMBL:AF305722EMBL:AL163972
EMBL:CP002686EnsemblPlants:AT3G56380EnsemblPlants:AT3G56380.1entrez:824805
GeneID:824805Genevisible:Q9FPR6GO:GO:0000156GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009736Gramene:AT3G56380.1
hmmpanther:PTHR26402hmmpanther:PTHR26402:SF521HOGENOM:HOG000034820InParanoid:Q9FPR6
InterPro:IPR001789InterPro:IPR011006KEGG:ath:AT3G56380KO:K14492
OMA:MYKRIPVPaxDb:Q9FPR6Pfam:PF00072Pfam:Q9FPR6
Pfscan:PS50110PhylomeDB:Q9FPR6PIR:T49039PRIDE:Q9FPR6
PRO:PR:Q9FPR6PROSITE:PS50110ProteinModelPortal:Q9FPR6Proteomes:UP000006548
RefSeq:NP_567037.1SMART:SM00448SMR:Q9FPR6STRING:3702.AT3G56380.1
SUPFAM:SSF52172TAIR:AT3G56380tair10-symbols:ARR17tair10-symbols:RR17
UniGene:At.5240UniProt:Q9FPR6
Coordinates (TAIR10) chr3:+:20905480..20906368
Molecular Weight (calculated) 16863.70 Da
IEP (calculated) 7.18
GRAVY (calculated) -0.10
Length 153 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKGCGSGSD SCLSSMEEEL HVLAVDDNLI DRKLVERILK ISSCKVTTAE NGLRALEYLG LGDPQQTDSL TNVMKVNLII TDYCMPGMTG FELLKKVKES
101: SNLKEVPVVI LSSENIPTRI NKCLASGAQM FMQKPLKLSD VEKLKCHLLN CRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)