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AT3G56220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription regulators; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40435.1); Has 248 Blast hits to 248 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 248; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JU35eggNOG:ENOG4110794EMBL:AK228035EMBL:AL163763
EMBL:BT004764EMBL:CP002686EnsemblPlants:AT3G56220EnsemblPlants:AT3G56220.1
entrez:824788GeneID:824788Gramene:AT3G56220.1hmmpanther:PTHR31945
hmmpanther:PTHR31945:SF21HOGENOM:HOG000241360IntAct:Q9LYM0InterPro:IPR011598
KEGG:ath:AT3G56220ncoils:CoilOMA:MLVCVLEPhylomeDB:Q9LYM0
PIR:T47739Proteomes:UP000006548RefSeq:NP_191181.1STRING:3702.AT3G56220.1
SUPFAM:SSF47459TAIR:AT3G56220UniGene:At.34957UniProt:Q9LYM0
Coordinates (TAIR10) chr3:+:20858941..20860302
Molecular Weight (calculated) 17308.40 Da
IEP (calculated) 5.31
GRAVY (calculated) -0.42
Length 156 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSREHKRGS SLREKFHLLR SITDSHAESE TSIIVDASKY IKKLKQKVEK INNATTSEQS FRESSDPNPM VTVETLEKGF MIKVMSRKNE AGMLVCVLET
101: FEDLGLDVVE ARVSCTDTFS LHAIGSSNND DGDCIDAEAV KQAVAEAIRT WSDSHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)