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AT3G52870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.500
cytosol 0.489
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ calmodulin-binding motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ calmodulin-binding motif family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT3G58480.1); Has 341 Blast hits to 277 proteins in 58 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 100; Plants - 209; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFNAeggNOG:ENOG410XYBDEMBL:AL132969EMBL:AY125521
EMBL:BT001053EMBL:CP002686EnsemblPlants:AT3G52870EnsemblPlants:AT3G52870.1
entrez:824453GeneID:824453Genevisible:Q9LFA4GO:GO:0005634
GO:GO:0005737Gramene:AT3G52870.1hmmpanther:PTHR31250hmmpanther:PTHR31250:SF10
InParanoid:Q9LFA4InterPro:IPR000048iPTMnet:Q9LFA4KEGG:ath:AT3G52870
OMA:PILAWICPaxDb:Q9LFA4Pfscan:PS50096PhylomeDB:Q9LFA4
PIR:T47544PRIDE:Q9LFA4PROSITE:PS50096Proteomes:UP000006548
RefSeq:NP_190855.1STRING:3702.AT3G52870.1TAIR:AT3G52870UniGene:At.35252
UniProt:Q9LFA4
Coordinates (TAIR10) chr3:-:19593365..19595686
Molecular Weight (calculated) 51157.20 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.55
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)