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AT3G52680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G00160.1); Has 2324 Blast hits to 2282 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2322; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFJJeggNOG:ENOG410YTU9EMBL:AL353912EMBL:BT028979
EMBL:CP002686EnsemblPlants:AT3G52680EnsemblPlants:AT3G52680.1EnsemblPlants:AT3G52680.2
entrez:824434Gene3D:3.80.10.10GeneID:824434Genevisible:Q9LXJ6
Gramene:AT3G52680.1Gramene:AT3G52680.2hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000220924InParanoid:Q9LXJ6InterPro:IPR001810InterPro:IPR006566
InterPro:IPR013101InterPro:IPR032675iPTMnet:Q9LXJ6KEGG:ath:AT3G52680
OMA:DYESEHYPaxDb:Q9LXJ6Pfam:PF00646Pfam:PF07723
Pfam:PF08387Pfam:Q9LXJ6Pfscan:PS50181PhylomeDB:Q9LXJ6
PIR:T49021PRIDE:Q9LXJ6PRO:PR:Q9LXJ6PROSITE:PS50181
ProteinModelPortal:Q9LXJ6Proteomes:UP000006548RefSeq:NP_001118825.1RefSeq:NP_190836.2
SMART:SM00579SMR:Q9LXJ6SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT3G52680UniGene:At.50272UniGene:At.53906UniProt:Q9LXJ6
Coordinates (TAIR10) chr3:+:19527075..19528838
Molecular Weight (calculated) 52258.20 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.11
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MISPTMEQGE SLRIRVVMGK DRISELPDGL LLKILSSLPT NIVVATSVLS KQWRSLWKLV PNLEFDSDDY ESEHYTFSEI VCKSFLSHKA PVLESFRLKF
101: VNFNPVDIGL WVGIAFSRHL RELVLDFYPA ELGKGVTFTF PSSLCTCNTL ETLKLVLCIL VDIPSPVLMK SLRTLHLEFV RYKDESSVRN LLSGCPGLEE
201: LRLYRGDDSD IKVFTIEVPS LQRLTIHDNN DGPEFWGYVI NAPFLKYLLI EELRCPEFCL NAPELVEANI AEVTSITIEK FLGSFTSVSR LLLNLSPLKI
301: TYPTGSMFYQ LVSLEMYTRE AEWWNLLTLM LENSPKLQVL KLTDRSQNFH KDGLVSGKWN EPKDVPECLL SQLETFVWRR FDWGREEEKE IATYILKNGR
401: RLKKATFSTN PIESEELNKL KERRKVLNGL DGVVRASNSC QLVFKFDPSY LGSDSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)