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AT3G52525.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.804
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ovate family protein 6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ovate family protein 6 (OFP6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF623 (InterPro:IPR006458); BEST Arabidopsis thaliana protein match is: Ovate family protein (TAIR:AT2G36026.1); Has 453 Blast hits to 451 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 453; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:9736eggNOG:ENOG410IZQ9eggNOG:ENOG410YV5MEMBL:AL050300
EMBL:CP002686EnsemblPlants:AT3G52525EnsemblPlants:AT3G52525.1entrez:824418
GeneID:824418GO:GO:0005634GO:GO:0006351GO:GO:0045892
Gramene:AT3G52525.1hmmpanther:PTHR33057hmmpanther:PTHR33057:SF17HOGENOM:HOG000064680
InParanoid:Q3EAL1IntAct:Q3EAL1InterPro:IPR006458KEGG:ath:AT3G52525
OMA:DISCGNCPaxDb:Q3EAL1Pfam:PF04844Pfam:Q3EAL1
Pfscan:PS51754PhylomeDB:Q3EAL1PRIDE:Q3EAL1PRO:PR:Q3EAL1
PROSITE:PS51754Proteomes:UP000006548RefSeq:NP_680125.1STRING:3702.AT3G52525.1
TAIR:AT3G52525tair10-symbols:ATOFP6tair10-symbols:OFP6TIGRfam:TIGR01568
TIGRFAMs:TIGR01568UniGene:At.45841UniProt:Q3EAL1
Coordinates (TAIR10) chr3:+:19475159..19475638
Molecular Weight (calculated) 17909.20 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.28
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MATKSKKKIL KTVSVVDISC GNCIKPTFAS IFNFFSKKPK RPSSTYRHCH SSISSATPSS TPLATASVAV EKDSDDPYLD FRQSMLQMIL ENQIYSKDEL
101: RELLQCFLSL NSHYHHGIIV RAFSEIWEDV SSAAASAVEA SPLITRHVSR ASRDYYNYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)