AT3G51060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Lateral root primordium (LRP) protein-related | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves. Binds to the promoter of YUC4 and YUC8 (binding site ACTCTAC) | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
STYLISH 1 (STY1); FUNCTIONS IN: protein heterodimerization activity, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT5G66350.1); Has 244 Blast hits to 244 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 38; Fungi - 9; Plants - 179; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18964606..18966130 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38354.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 370 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGFFSLDGG GGGGGGGGNN QEDHRSNTNP PPPVSEAWLW YRNPNVNANA NTNVNANAPS SSNAALGTLE LWQNHNQQEI MFQHQQHQQR LDLYSSAAGL 101: GVGPSNHNQF DISGETSTAG AGRAAAMMMI RSGGSGGGSG GVSCQDCGNQ AKKDCSHMRC RTCCKSRGFE CSTHVRSTWV PAAKRRERQQ QLATVQPQTQ 201: LPRGESVPKR HRENLPATSS SLVCTRIPSH SGLEVGNFPA EVSSSAVFRC VRVSSVEDGE EEFAYQTAVS IGGHIFKGIL YDLGPGSSGG GGYNVVAAGE 301: SSSGGGGAQQ LNLITAGSVT VATASSSTPN LGGIGSSSAA AATYIDPAAL YPTPINTFMA GTQFFPNPRS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)