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AT3G50860.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.981
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Clathrin adaptor complex small chain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Clathrin adaptor complex small chain family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, clathrin vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT2G19790.1); Has 2004 Blast hits to 2002 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 430; Plants - 303; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Protein Annotations
BioGrid:9568eggNOG:COG5030eggNOG:KOG0936EMBL:AL049862
EMBL:AY065287EMBL:AY096709EMBL:CP002686EnsemblPlants:AT3G50860
EnsemblPlants:AT3G50860.1entrez:824250GeneID:824250Genevisible:Q8VZ37
GO:GO:0005794GO:GO:0006886GO:GO:0008565GO:GO:0016192
GO:GO:0030123GO:GO:0030659Gramene:AT3G50860.1hmmpanther:PTHR11753
hmmpanther:PTHR11753:SF2HOGENOM:HOG000185228InParanoid:Q8VZ37InterPro:IPR000804
InterPro:IPR011012InterPro:IPR016635InterPro:IPR022775InterPro:IPR027155
KEGG:ath:AT3G50860KO:K12399ncoils:CoilOMA:EMIIGGV
PANTHER:PTHR11753PANTHER:PTHR11753:SF2PaxDb:Q8VZ37Pfam:PF01217
Pfam:Q8VZ37PhylomeDB:Q8VZ37PIR:T08407PIRSF:PIRSF015588
PRIDE:Q8VZ37PRO:PR:Q8VZ37PROSITE:PS00989ProteinModelPortal:Q8VZ37
Proteomes:UP000006548RefSeq:NP_190655.2scanprosite:PS00989SMR:Q8VZ37
STRING:3702.AT3G50860.1SUPFAM:SSF64356TAIR:AT3G50860UniGene:At.28528
UniGene:At.48757UniProt:Q8VZ37
Coordinates (TAIR10) chr3:+:18902346..18903959
Molecular Weight (calculated) 18729.80 Da
IEP (calculated) 4.70
GRAVY (calculated) 0.14
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)