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AT3G26420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain
Curator
Summary (TAIR10)
Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance.
Computational
Description (TAIR10)
ATRZ-1A; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT5G04280.1); Has 19846 Blast hits to 11644 proteins in 926 species: Archae - 13; Bacteria - 5482; Metazoa - 6891; Fungi - 1262; Plants - 3241; Viruses - 222; Other Eukaryotes - 2735 (source: NCBI BLink).
Protein Annotations
BioGrid:7577eggNOG:ENOG410IQWYeggNOG:ENOG411219QEMBL:AF424613
EMBL:AK221725EMBL:AK227088EMBL:AP001298EMBL:AY054613
EMBL:AY072457EMBL:CP002686EnsemblPlants:AT3G26420EnsemblPlants:AT3G26420.1
entrez:822246Gene3D:3.30.70.330Gene3D:4.10.60.10GeneID:822246
Genevisible:Q9LIN3GO:GO:0000166GO:GO:0003677GO:GO:0003723
GO:GO:0005634GO:GO:0005737GO:GO:0005829GO:GO:0008270
GO:GO:0009409Gramene:AT3G26420.1hmmpanther:PTHR24012HOGENOM:HOG000276232
InParanoid:Q9LIN3IntAct:Q9LIN3InterPro:IPR000504InterPro:IPR001878
InterPro:IPR012677KEGG:ath:AT3G26420KO:K12885OMA:RYGPDRN
PaxDb:Q9LIN3Pfam:PF00076Pfam:PF00098Pfam:Q9LIN3
Pfscan:PS50102Pfscan:PS50158PhylomeDB:Q9LIN3PRIDE:Q9LIN3
PRO:PR:Q9LIN3PROSITE:PS50102PROSITE:PS50158ProteinModelPortal:Q9LIN3
Proteomes:UP000006548RefSeq:NP_189273.1SMART:SM00343SMART:SM00360
SMR:Q9LIN3STRING:3702.AT3G26420.1SUPFAM:SSF54928SUPFAM:SSF57756
TAIR:AT3G26420tair10-symbols:ATRZ-1AUniGene:At.48707UniProt:Q9LIN3
Coordinates (TAIR10) chr3:+:9671953..9673055
Molecular Weight (calculated) 26924.40 Da
IEP (calculated) 9.03
GRAVY (calculated) -1.40
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEDPEYRCF IGGLAWTTSD RGLRDAFEKY GHLVEAKVVL DKFSGRSRGF GFITFDEKKA MDEAIAAMNG MDLDGRTITV DKAQPHQGGA GRDNDGDRGR
101: DRGYDRDRSR PSGGRGGGDC FKCGKPGHFA RECPSESSRD GGGRFSSKDD RYSSKDDRYG AKDDRYGAKE DRYGAKDDRY SSKDDRYSSK DDRYGSRDGG
201: GSRYGPDRSG ERAGGRSRDG GSRGAPGGER HSRAPYDRPR AGGFH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)