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AT3G13970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AUTOPHAGY 12 B (APG12B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy; LOCATED IN: cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 12 (InterPro:IPR007242); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G54210.1); Has 304 Blast hits to 304 proteins in 150 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
BioGrid:5945eggNOG:ENOG4111ND7eggNOG:KOG3439EMBL:AB019229
EMBL:AB073185EMBL:AK118997EMBL:BT024653EMBL:CP002686
EnsemblPlants:AT3G13970EnsemblPlants:AT3G13970.1entrez:820611EvolutionaryTrace:Q9LVK3
GeneID:820611GO:GO:0000045GO:GO:0000422GO:GO:0006501
GO:GO:0006914GO:GO:0015031GO:GO:0019776GO:GO:0034045
GO:GO:0034274GO:GO:0044804Gramene:AT3G13970.1hmmpanther:PTHR13385
HOGENOM:HOG000234863InParanoid:Q9LVK3IntAct:Q9LVK3InterPro:IPR007242
InterPro:IPR029071KEGG:ath:AT3G13970KO:K08336OMA:IGRISEF
PANTHER:PTHR13385PaxDb:Q9LVK3PDB:1WZ3PDBsum:1WZ3
Pfam:PF04110Pfam:Q9LVK3PhylomeDB:Q9LVK3PRO:PR:Q9LVK3
ProteinModelPortal:Q9LVK3Proteomes:UP000006548Reactome:R-ATH-1632852RefSeq:NP_188013.2
SMR:Q9LVK3STRING:3702.AT3G13970.1SUPFAM:SSF54236TAIR:AT3G13970
tair10-symbols:APG12tair10-symbols:APG12BUniGene:At.39312UniProt:Q9LVK3
Coordinates (TAIR10) chr3:-:4613696..4614794
Molecular Weight (calculated) 10358.30 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.05
Length 94 amino acids
Sequence (TAIR10)
(BLAST)
1: MATESPNSVQ KIVVHLRATG GAPILKQSKF KVSGSDKFAN VIDFLRRQLH SDSLFVYVNS AFSPNPDESV IDLYNNFGFD GKLVVNYACS MAWG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)