AT3G10130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : SOUL heme-binding family protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastoglobule; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT5G20140.1); Has 1532 Blast hits to 1528 proteins in 169 species: Archae - 17; Bacteria - 184; Metazoa - 176; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 927 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:-:3131122..3133158 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35037.20 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.72 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
Length | 309 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MMMISSSSIT SSLSLLSSSP EKLPLINPIQ RCPITYSGFR TASVNRAIRR QPQSPAVSAT ESRVSLVLAL ASQASSVSQR LLADLAMETA KYVFPKRFDS 101: STNLEEAFMS VPDLETMNFR VLFRTDKYEI RQVEPYFVAE TIMPGETGFD SYGASKSFNV LAEYLFGKNT IKEKMEMTTP VVTRKVQSVG EKMEMTTPVI 201: TSKAKDQNQW RMSFVMPSKY GSNLPLPKDP SVKIQQVPRK IVAVVAFSGY VTDEEIERRE RELRRALQND KKFRVRDGVS FEVAQYNPPF TLPFMRRNEV 301: SLEVENKED |
||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)