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AT3G05490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 22
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 22 (RALFL22); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 266 Blast hits to 266 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 264; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4MVeggNOG:ENOG410Z3VJEMBL:AC009606EMBL:AY088700
EMBL:BT002767EMBL:BT024562EMBL:CP002686EnsemblPlants:AT3G05490
EnsemblPlants:AT3G05490.1entrez:819714GeneID:819714Genevisible:Q9MA62
GO:GO:0004871GO:GO:0005179GO:GO:0005622GO:GO:0007267
GO:GO:0009506GO:GO:0019722GO:GO:0048046Gramene:AT3G05490.1
hmmpanther:PTHR33136hmmpanther:PTHR33136:SF13HOGENOM:HOG000237626InParanoid:Q9MA62
InterPro:IPR008801KEGG:ath:AT3G05490OMA:FDSEISRPaxDb:Q9MA62
Pfam:PF05498Pfam:Q9MA62PhylomeDB:Q9MA62PRIDE:Q9MA62
PRO:PR:Q9MA62Proteomes:UP000006548RefSeq:NP_566253.1STRING:3702.AT3G05490.1
TAIR:AT3G05490tair10-symbols:RALFL22TMHMM:TMhelixUniGene:At.43157
UniProt:Q9MA62
Coordinates (TAIR10) chr3:+:1591381..1591740
Molecular Weight (calculated) 13030.40 Da
IEP (calculated) 8.36
GRAVY (calculated) -0.20
Length 119 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNTRAIYAV IAILAIVISA VESTGDFGDS LDFVRAGSSS LFSGCTGSIA ECIAEEEEME FDSDISRRIL AQKKYISYGA MRRNSVPCSR RGASYYNCQR
101: GAQANPYSRG CSTITRCRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)