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AT3G03540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : non-specific phospholipase C5
Curator
Summary (TAIR10)
Encodes a nonspecific phospholipase C. Located in the cytosol. Involved in the conversion of phospholipids to glycolipids under phosphate deprivation conditions.
Computational
Description (TAIR10)
non-specific phospholipase C5 (NPC5); CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C4 (TAIR:AT3G03530.1); Has 2077 Blast hits to 2037 proteins in 379 species: Archae - 32; Bacteria - 1720; Metazoa - 0; Fungi - 127; Plants - 154; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G03540-MONOMERBioCyc:MetaCyc:AT3G03540-MONOMEREC:3.1.4.3eggNOG:COG3511
eggNOG:ENOG410IJCMEMBL:AB084294EMBL:AC009327EMBL:AC009895
EMBL:CP002686EnsemblPlants:AT3G03540EnsemblPlants:AT3G03540.1entrez:821241
GeneID:821241Genevisible:Q9S816GO:GO:0004629GO:GO:0005829
GO:GO:0009247GO:GO:0009395GO:GO:0016036GO:GO:0034480
Gramene:AT3G03540.1gramene_pathway:3.1.4.3gramene_pathway:LIPASYN-PWYhmmpanther:PTHR31956
hmmpanther:PTHR31956:SF1HOGENOM:HOG000192929InParanoid:Q9S816InterPro:IPR007312
InterPro:IPR017850KEGG:ath:AT3G03540KO:K01114OMA:NPANDDH
PaxDb:Q9S816Pfam:PF04185Pfam:Q9S816PhylomeDB:Q9S816
PRIDE:Q9S816PRO:PR:Q9S816ProteinModelPortal:Q9S816Proteomes:UP000006548
RefSeq:NP_566207.1STRING:3702.AT3G03540.1SUPFAM:SSF53649TAIR:AT3G03540
tair10-symbols:NPC5UniGene:At.40965UniProt:Q9S816
Coordinates (TAIR10) chr3:-:846350..848297
Molecular Weight (calculated) 59074.30 Da
IEP (calculated) 5.88
GRAVY (calculated) -0.60
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MAETKKGSES YPIKTIVVLV QENRSFDHTL GWFKELNREI DGVMKSDQKF NPGFSSDLNS HNVVFGDQSQ YVDPNPGHSI RDIYEQVFGK PWDSGHPDPN
101: PGPATMSGFA QNAERKMKGM SSAVMNGFKP DALPVYKELV QNFAICDRWF ASVPGATQPN RLFIHSATSH GTTNNERKLL IEGFPQKTIF ESLDEAGFTF
201: GIYYQCFPTT LFYRNLRKLK YLTRFHDYGL QFKKDCKEGN LPNYVVVEQR WYDLLLNPAN DDHPSHDVSE GQKLVKEVYE ALRSSPQWNE ILFIITYDEH
301: GGFYDHVPTP LDGVPNPDGI LGPPPYNFEF NRLGVRVPTF FISPWIEPGT VLHGSNGPYL MSQYEHSSIP ATVKKIFKLK DFLTKRDSWA GTFESVITRN
401: SPRQDCPETL SNPVKMRGTV AKENAELSDF QEELVIVAAG LKGDYKNEEL LYKLCKKTCV SDASKYVTKA FDKFVEESKK ARERGGDEND IVFCVDDDDD
501: HNVVKPPPSQ SEPSHATPWS N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)