AT3G03540.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : non-specific phospholipase C5 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a nonspecific phospholipase C. Located in the cytosol. Involved in the conversion of phospholipids to glycolipids under phosphate deprivation conditions. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
non-specific phospholipase C5 (NPC5); CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C4 (TAIR:AT3G03530.1); Has 2077 Blast hits to 2037 proteins in 379 species: Archae - 32; Bacteria - 1720; Metazoa - 0; Fungi - 127; Plants - 154; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr3:-:846350..848297 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 59074.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.88 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 521 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAETKKGSES YPIKTIVVLV QENRSFDHTL GWFKELNREI DGVMKSDQKF NPGFSSDLNS HNVVFGDQSQ YVDPNPGHSI RDIYEQVFGK PWDSGHPDPN 101: PGPATMSGFA QNAERKMKGM SSAVMNGFKP DALPVYKELV QNFAICDRWF ASVPGATQPN RLFIHSATSH GTTNNERKLL IEGFPQKTIF ESLDEAGFTF 201: GIYYQCFPTT LFYRNLRKLK YLTRFHDYGL QFKKDCKEGN LPNYVVVEQR WYDLLLNPAN DDHPSHDVSE GQKLVKEVYE ALRSSPQWNE ILFIITYDEH 301: GGFYDHVPTP LDGVPNPDGI LGPPPYNFEF NRLGVRVPTF FISPWIEPGT VLHGSNGPYL MSQYEHSSIP ATVKKIFKLK DFLTKRDSWA GTFESVITRN 401: SPRQDCPETL SNPVKMRGTV AKENAELSDF QEELVIVAAG LKGDYKNEEL LYKLCKKTCV SDASKYVTKA FDKFVEESKK ARERGGDEND IVFCVDDDDD 501: HNVVKPPPSQ SEPSHATPWS N |
||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)