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AT2G46670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : CCT motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 9 (TAIR:AT2G46790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AB493594EMBL:CP002685
EnsemblPlants:AT2G46670EnsemblPlants:AT2G46670.1entrez:819279GeneID:819279
Gramene:AT2G46670.1hmmpanther:PTHR31319InterPro:IPR010402KEGG:ath:AT2G46670
Pfam:PF06203Pfscan:PS51017PhylomeDB:C0SV91PROSITE:PS51017
Proteomes:UP000006548RefSeq:NP_182190.2STRING:3702.AT2G46670.1TAIR:AT2G46670
UniGene:At.65052UniProt:C0SV91
Coordinates (TAIR10) chr2:-:19164589..19165233
Molecular Weight (calculated) 20539.80 Da
IEP (calculated) 10.48
GRAVY (calculated) -1.22
Length 183 amino acids
Sequence (TAIR10)
(BLAST)
001: MYLTCRFEES KSAEKAVVAL EESTSGEPKT PTESHEKLRK VRSDQGSSTT SSNQENIGSS SVSFRNQVLQ STVTNQKQDS PIPVESNREK AASKEVEAGS
101: QSTNEGIAGQ SSSTEKPKEE ESAKQRWSRS QREAALMKFR LKRKDRCFDK KVRYQSRKKL AEQRPRVKGQ FVRTVNSDAS TKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)