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AT2G40100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : light harvesting complex photosystem II
Curator
Summary (TAIR10)
Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II
Computational
Description (TAIR10)
light harvesting complex photosystem II (LHCB4.3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT5G01530.1); Has 2254 Blast hits to 2193 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1937; Viruses - 0; Other Eukaryotes - 314 (source: NCBI BLink).
Protein Annotations
BioGrid:3937eggNOG:ENOG410IEXDeggNOG:ENOG410YYUXEMBL:AF134128
EMBL:AY070392EMBL:AY088398EMBL:AY096735EMBL:CP002685
EnsemblPlants:AT2G40100EnsemblPlants:AT2G40100.1entrez:818599ExpressionAtlas:Q9S7W1
Gene3D:1.10.3460.10GeneID:818599Genevisible:Q9S7W1GO:GO:0009507
GO:GO:0009522GO:GO:0009523GO:GO:0009534GO:GO:0009535
GO:GO:0009579GO:GO:0009637GO:GO:0009768GO:GO:0009941
GO:GO:0010114GO:GO:0010218GO:GO:0010287GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872hmmpanther:PTHR21649hmmpanther:PTHR21649:SF32HOGENOM:HOG000238033
InParanoid:Q9S7W1InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329
iPTMnet:Q9S7W1OMA:YPGGYFDPANTHER:PTHR21649PaxDb:Q9S7W1
Pfam:PF00504Pfam:Q9S7W1PhylomeDB:Q9S7W1PIR:T52316
PRIDE:Q9S7W1PRO:PR:Q9S7W1ProteinModelPortal:Q9S7W1Proteomes:UP000006548
RefSeq:NP_181539.1SMR:Q9S7W1STRING:3702.AT2G40100.1SUPFAM:0043399
SUPFAM:SSF103511TAIR:AT2G40100tair10-symbols:LHCB4.3TMHMM:TMhelix
UniGene:At.24469UniProt:Q9S7W1
Coordinates (TAIR10) chr2:+:16745884..16747190
Molecular Weight (calculated) 30213.20 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.10
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ
101: NLAKNVAGDI IGIIQESSEI KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY LGQPLPFSLT TLIWIEVLVV
201: GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)