AT2G36590.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : proline transporter 3 | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. | ||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
proline transporter 3 (ProT3); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: proline transporter 1 (TAIR:AT2G39890.2); Has 1618 Blast hits to 1612 proteins in 173 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 169; Plants - 1227; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:15343122..15345167 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47654.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.80 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.68 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 436 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNSKNRINNV GEGVDIEIPD TAHQISSDSW FQAAFVLTTS INSAYVLGYS GTVMVPLGWI GGVVGLILAT AISLYANTLV AKLHEFGGKR HIRYRDLAGF 101: IYGRKAYCLT WVLQYVNLFM INCGFIILAG SALKAVYVLF RDDHAMKLPH FIAIAGLICA VFAIGIPHLS ALGIWLAVST ILSLIYIVVA IVLSVKDGVK 201: APSRDYEIQG SPLSKLFTIT GAAATLVFVF NTGMLPEIQA TVKQPVVKNM MKALYFQFTV GVLPMFAVVF IGYWAYGSST SPYLLNNVNG PLWVKALANI 301: SAILQSVISL HIFASPTYEY MDTKFGIKGN PLALKNLLFR IMARGGYIAV STLLSALLPF LGDFMSLTGA VSTFPLTFIL ANHMYYKAKN NKLNTLQKLC 401: HWLNVVFFSL MSVAAAIAAL RLIALDSKNF HVFADL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)