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AT2G31720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Domain of unknown function (DUF313)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G18810.1); Has 146 Blast hits to 146 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3075eggNOG:ENOG410JSNReggNOG:ENOG41108N6EMBL:AB493574
EMBL:AC007071EMBL:AJ441118EMBL:BT026082EMBL:CP002685
EnsemblPlants:AT2G31720EnsemblPlants:AT2G31720.1entrez:817728Gene3D:2.40.330.10
GeneID:817728Genevisible:Q8RV83GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT2G31720.1hmmpanther:PTHR31541
hmmpanther:PTHR31541:SF22HOGENOM:HOG000155152InParanoid:Q8RV83InterPro:IPR003340
InterPro:IPR005508InterPro:IPR015300KEGG:ath:AT2G31720OMA:ERSDINN
PaxDb:Q8RV83Pfam:PF03754Pfam:Q8RV83Pfscan:PS50863
PhylomeDB:Q8RV83PIR:C84724PRIDE:Q8RV83PRO:PR:Q8RV83
PROSITE:PS50863ProteinModelPortal:Q8RV83Proteomes:UP000006548RefSeq:NP_180730.1
STRING:3702.AT2G31720.1SUPFAM:SSF101936TAIR:AT2G31720UniGene:At.38182
UniProt:Q8RV83
Coordinates (TAIR10) chr2:-:13485034..13485975
Molecular Weight (calculated) 35846.10 Da
IEP (calculated) 7.38
GRAVY (calculated) -0.54
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRGDDQLNG LQGGKRALDI LCVATERTVS AFAYEEIGET STEGDKRRER LRRLRRLINY SLSTTMNSSL SKRLKIDECK NQDPEQNPNR VASSPSSCHL
101: ESKRPQKVVS NKPVRNRKPV IVTDEDRTPT EWLIDVMREV NGMDAKLIFV KVLPNSDVDE LQTRLMMPWK QILDMDFLNE EELEKIDRHH KKISASDKGA
201: DVIVVNSKGL QRKLKLKRWD MTSTSNYVLG LGWNKVVTDN ILQRGTRLRI WSFHSPDMLF FAFVLSDPDP APTECLNLLA KLCEETTCLE ALQEANRMSS
301: LVSDTELDLE LRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)