AT2G29070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.784 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin fusion degradation UFD1 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin fusion degradation UFD1 family protein; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: ubiquitin fusion degradation 1 (TAIR:AT2G21270.2); Has 693 Blast hits to 691 proteins in 215 species: Archae - 0; Bacteria - 0; Metazoa - 163; Fungi - 203; Plants - 125; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12488061..12489335 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31255.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPPSALDRLA SLHIEYPMLF QLSNVSVEKT SHCGVLEFTA DEGLVYLPYW MMQNMSLEEG DVMQVKNISL VKGTYIKLQP HTQDFLDISN PKAILETTLR 101: SYSCLTTGDT IMVPYNNKQY YINVVEAKPS SAVSIIETDC EVDFAPPLDY KEPEKPQKLT PSNKRPLQVK EEEEPASKVP KFTPFTGSGK RLDGKAQTQT 201: EPEDTKQQEK PTENGKDDEK LSVTTPRQIS GKLVFGSNSK SAAKETAKVD DPKNIVQESS TKSDEAKFKV FTGKKYSLNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)