AT2G24030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding;nucleic acid binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding;nucleic acid binding; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:10220183..10222010 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51016.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.77 | ||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEFRYRAIDN NRPPPATDTT PSPSLKPNFP FLSERSMPGQ QSEDQVREAI KREIEKEQIR QEIIIAEAAR KRELIAEVLQ EMAIEREMAI RRVSDTEMSL 101: EEKLTMWINQ RKLPNQNQNQ FNNFFRQKYS YIDSLINTGS YNSLLTSPMM QLPQLQQMSE ATGTSMLESN KENLIVLNRA DIIGAKPKAD SVGTMQLPKL 201: QQMPEATGTS VLESNKEQFI VLARADPVGE KRKAEDIQTG LNEDLQVKRP KAKESEAKAM SLETGEIVSS KVPCSGKLGS GKKAEGKLRT NQKFWCEICK 301: VGTYCQIVMR DHELGKKHKA AVTQQNETPE AASTSLSPAS VTAPQPEAIR VCENANPQGQ KVDEIAAKET TGKKTKGEKK KKETVWCKTC NIQTNSEQTM 401: RNHTLGKKHM ALLEKQQNKL ITVPVRSLNA DPGQKESVSL AMDDTQGKVH CLEKS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)